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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG314000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 365aa MW: 38917.2 Da PI: 6.706 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 137 | 189 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k Pavir.9NG314000.1.p 137 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 189 44799***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 2.9e-41 | 135 | 227 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 e+krrls eqv++LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e Pavir.9NG314000.1.p 135 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAHNKKLHAE 224 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Pavir.9NG314000.1.p 225 IMA 227 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-20 | 110 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-18 | 134 | 195 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-19 | 134 | 193 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.03E-18 | 136 | 192 | No hit | No description |
Pfam | PF00046 | 8.9E-16 | 137 | 189 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.4E-6 | 162 | 171 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.4E-6 | 171 | 187 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.9E-13 | 191 | 230 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MKPMATNGMA PSFFPANFLL QMQQPLPHHP QQQEHHHHHH HHDAGHHEHE APTHHLLAPP 60 PPGLVSPFLH DFGGAMAAPP MLAGGGLGKR MYADGAGDDG NLQHAAADPQ QQDGGAAASD 120 DEEGSAKAGG GCGGERKRRL SVEQVRTLER SFEVANKLEP ERKAQLARAL GLQPRQVAIW 180 FQNRRARWKT KQLEKDYDAL RRQLDAARAE NDALLAHNKK LHAEIMALKG GGGGGGRQEA 240 ASELINLNVK ETEASCSNRS ENSSEINLDI SRAPAPAAAD HESPAAMNGH RGLPFYASAA 300 VDQLLHSGHP SPAAAEPKME LGHGATADTP SATPGGSFGS LLCGAVVDEQ PPFWPWADGH 360 HNFQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 139 | ERKRRL |
2 | 183 | 191 | RRARWKTKQ |
3 | 228 | 236 | KGGGGGGGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.34086 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983144.1 | 1e-176 | PREDICTED: homeobox-leucine zipper protein HOX23-like | ||||
Swissprot | Q94GL5 | 2e-95 | HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23 | ||||
Swissprot | A2Z734 | 2e-95 | HOX23_ORYSI; Homeobox-leucine zipper protein HOX23 | ||||
TrEMBL | A0A060D8B1 | 1e-153 | A0A060D8B1_MAIZE; HB transcription factor (Fragment) | ||||
STRING | GRMZM5G803812_P01 | 1e-153 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-49 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG314000.1.p |